clcbio.tv

De Novo Assembly

Thu, 10 May 2012 08:52:44 GMT

How to perform de novo assembly and run a batch BLAST analysis of the results.

The Rubber Genome Project - Sequencing of the white blood of the world economy

Thu, 15 Mar 2012 08:54:34 GMT

Rubber Genome, white blood, Draft Genome Publication, Malaysia, Centre for Chemical Biology, Dr. Alam

CLC Genomics Workbench 5.0 - Update

Thu, 09 Feb 2012 11:37:07 GMT

Transcript discovery

Tue, 10 Jan 2012 10:35:41 GMT

An overview of how to go from RNA-Seq reads to an annotated reference genome.

Structural Variation

Thu, 03 Nov 2011 11:26:13 GMT

See the cool features of our Structural Variation plug-in

JCVI: Drive your science forward

Tue, 18 Oct 2011 11:10:57 GMT

JCVI focus on new cutting edge tools giving them the advantage to drive the science forward

Interview with Indresh Singh, Lead, Informatics Core Service, JCVI:
"Analysis is the bottleneck. Analysis costs and disk storage costs is going up, so the only solution is to analyze the data faster."

New features in CLC Genomics Server 3.5

Wed, 12 Oct 2011 13:19:46 GMT

A brief overview of the new features in the CLC Genomics Server 3.5 release.

New features in Genomics Workbench 4.8

Wed, 12 Oct 2011 10:18:51 GMT

This video shows an overview of the new features in Genomics Workbench 4.8

Genomics Gateway - Filtering of cancer associated variations

Thu, 06 Oct 2011 11:18:28 GMT

Filtering of cancer associated variations using breast cancer cell line HCC1954.

Multiplexing Tutorial

Thu, 06 Oct 2011 10:38:44 GMT

In this tutorial, Camilla E. Andersen, our Application Specialist, makes an introduction to the multiplexing tool, and shows how to sort your sequence reads by sampling specific tags.

Focus on your science - not on the tools

Thu, 29 Sep 2011 08:41:12 GMT

Check out this new video explaining some of our solutions - quickly giving you a nice overview!

FABI investigating the genome of a fungus causing the pitch canker disease

Thu, 08 Sep 2011 06:44:03 GMT

Interview with Dr. Martin Coetzee, Senior Lecturer, Department of Genetics and Researcher at Forestry and Agricultural Biotechnology Institute (FABI) and Dr. Arshad Ismail, GS Technology Platform Manager, Inqaba Biotec.

RNA seq sample comparison

Thu, 08 Sep 2011 06:38:34 GMT

How to set up an experiment for sample comparison. The impact of non-specific matches on expression measurements.

Investigating ancestral polyploidy in plants at Penn State

Tue, 16 Aug 2011 07:39:38 GMT

Interview with Dr. Claude dePamphilis, Professor of Biology at Penn State University.

RNA seq analysis part I

Mon, 15 Aug 2011 14:46:29 GMT

Creation of an RNA seq sample and initial interpretation of the result.

Stacked view with read-mapping

Wed, 06 Jul 2011 13:34:02 GMT

Short demo of the graphical display 'stacked' view, which greatly improves the overview of any read-mapping.

Preview of Genomics Gateway

Thu, 09 Jun 2011 04:45:35 GMT

Dr. Anika Joecker demonstrates how to use Genomics Gateway for detection a cancer mutation.

ARC establishes South African bioinformatics network for agricultural research

Thu, 12 May 2011 07:37:18 GMT

Interview with Dr. Jasper Rees, Head of the Biotechnology Platform, Agricultural Research Council (ARC), South Africa

In order to address their key strategic areas of improving food security, increasing crop productivity, Agricultural Research Council recently made two large investments.

The first in a complete High-Throughput Sequencing platform solution allowing them to incorporate both NGS and advanced genotyping technologies into a single instrument.

The second investment was made in the area of bioinformatics – hardware and software. The core of this investment sits with an enterprise platform enabling them to effiently distribute genomics tools and bioinformatics analysis throughout the ARC – spread accross nearly 2000 km of geographical space.

De novo sequencing

Thu, 12 May 2011 07:36:21 GMT

Learn how to import data, perform de novo assembly and run a batch BLAST analysis of the results.

You can read the pdf for this tutorial here:
http://www.clcbio.com/examples/pdf/De_novo_assembly_and_BLAST.pdf

Using RNAi to regulate gene expression in cancer and TTR

Tue, 08 Feb 2011 11:09:41 GMT

Head of Informatics, Greg Hinkle, PhD, Alnylam Pharmaceuticals elaborates on the potential of RNAi, including examples in liver cancer, and TTR.

Cloning work flow

Tue, 08 Feb 2011 11:08:28 GMT

Shows the work flow of an in silico cloning

Running data sets in batch

Tue, 01 Feb 2011 09:48:11 GMT

New feature with Genomics Workbench 4.5! You can run your analysis in batch.

Use your valuable bioinformatics staff for breaking new grounds

Thu, 09 Dec 2010 09:58:28 GMT

Associate Director at ICBR, University of Florida, Dr. Bill Farmerie, says today's challenge is not dealing with the instruments themselves, but the data that comes off them.

Viewing sequences

Thu, 09 Dec 2010 09:58:18 GMT

This brief tutorial will take you through some different ways to display a sequence in the program. The tutorial introduces zooming on a sequence, dragging tabs, and opening selection in new view.

RNA-Seq milk cell transcriptome research at UC Davis

Tue, 09 Nov 2010 11:26:40 GMT

At present UC Davis are working on improving the content of oligosaccharides in bovine milk.
Working on an initiative referred to as the Foods for Health Institute, whose goal is to improve human health through food.

See Professor Juan F. Medrano, PhD from the Animal Genomics Laboratory, UC Davis elaborate on their exciting project.

View settings

Tue, 09 Nov 2010 08:35:45 GMT

This brief tutorial will show you how to use the Side Panel to change the way your sequences, alignments and other data are shown. You will also see how to save the changes that you made in the Side Panel and how to adjust view settings.

Algorithm & client APIs

Thu, 14 Oct 2010 07:39:26 GMT

Mikael Flensborg, Director of Enterprise Solutions at CLC bio elaborates on our two different APIs for both our desktop and server infrastructure, along with highlighting clcdeveloper.com

Customize to your needs

Thu, 14 Oct 2010 07:39:18 GMT

Mikael Flensborg, Director of Enterprise Solutions at CLC bio elaborates on the possibilities of customization and integration, including an example from Ablynx.

A flexible enterprise platform

Thu, 14 Oct 2010 07:39:12 GMT

Mikael Flensborg, Director of Enterprise Solutions at CLC bio elaborates on our flexible enterprise platform which can service as your bioinformatics backbone.

Sequence data management

Thu, 14 Oct 2010 07:39:02 GMT

Mikael Flensborg, Director of Enterprise Solutions at CLC bio elaborates on sequence data management and CLC bio's data model.

Getting started

Thu, 14 Oct 2010 07:12:07 GMT

Learn how to get started using the CLC Workbench.

In this video tutorial you will get an introduction to the user interface; import of data, supported file formats, arranging data, and more.

Science as a Service by EdgeBio

Mon, 30 Aug 2010 09:30:46 GMT

Director of Bioinformatics at EdgeBio, Justin H. Johnson, elaborates on the concept of Science as a Service at CHI's "Beyond Sequencing" conference in San Francisco, June 2010.

Symphogen's tailormade workflow

Wed, 18 Aug 2010 14:23:37 GMT

Director of Consulting Services at CLC bio, Jannick Dyrløv Bendtsen, PhD, gives examples of special solutions tailormade for customers. In this case a complete workflow for Danish antibody biotech, Symphogen.

Turnkey solution for full genome data analysis by PSSC Labs and CLC bio

Thu, 12 Aug 2010 07:29:48 GMT

Together with PSSC Labs we have introduced a turnkey solution for full-genome data analysis. Watch the interviews with Alex Lesser, Vice President, Bioinformatics Solutions at PSSC Labs and Thomas Knudsen, CEO at CLC bio.

Opening a DNA sequence

Mon, 28 Jun 2010 11:22:25 GMT

A brief tutorial showing how to open a DNA sequence in the CLC Workbenches.

CLC bio Mobile Barcode Scanner

Fri, 25 Jun 2010 17:41:34 GMT

Adjust and save view settings

Thu, 24 Jun 2010 10:36:59 GMT

This tutorial shows you how to adjust view settings, e.g. which restriction sites to display on your sequence, and also how to save the settings.

Working with sequence lists

Thu, 24 Jun 2010 10:32:03 GMT

Sequence lists provide an easy way of working with many sequences at a time. This tutorial will show you how to easily add and remove sequence from a list.

Cloning Part II

Thu, 24 Jun 2010 07:42:32 GMT

In silico cloning - inserting the fragment

Cloning Part I

Thu, 24 Jun 2010 07:39:38 GMT

In silico cloning - finding the right enzymes

CLC Rubik's cube speed record: 23 seconds

Thu, 24 Jun 2010 02:30:30 GMT

The top notch Danish speedcuber behind www.rubiks.dk gives the CLC branded Rubik's cube a whirl and finishes in a staggering 23 seconds! Note that this cube is more difficult to resolve, due to the logos on each side having to be placed correctly.

Assembly of sequencing data

Tue, 22 Jun 2010 18:02:07 GMT

This tutorial will show you how to analyze your sequencing data and assemble the reads to a reference sequence.

BLAST

Mon, 21 Jun 2010 09:18:02 GMT

This tutorial shows you how to conduct a BLAST search at NCBI from within the CLC Workbench.

Primer design

Mon, 21 Jun 2010 09:14:11 GMT

This tutorial will show you how to design standard PCR primers using the CLC Workbench.

Double haploid apple genome project in South Africa

Thu, 17 Jun 2010 20:27:52 GMT

Professor Jasper Rees and Dr. Joseph Mafofo from the University of the Western Cape, South Africa, shares some preliminary results and challenges from their Golden Delicious apple genome sequencing project.

Genome project - Research on plant diseases

Thu, 17 Jun 2010 16:15:06 GMT

See how CLC bio's de novo assembler is making research easier for Eva Stukenbrock, Postdoc, Cand. Scient. PhD at BiRC, Aarhus University

Lupus erythematosus research by OMRF

Thu, 17 Jun 2010 13:28:01 GMT

Researchers at the Oklamhoma Medical Research Foundation elaborate on their sequence capture approach to identifying novel genes that are linked to Lupus erythematosus.

X-Linked mental retardation study from the Max-Planck Institute

Thu, 17 Jun 2010 08:01:15 GMT

Scientist, Jeremy Lambert, from RainDance elaborates on how their microdroplet technology, high-throughput sequencing, and CLC bio’s bioinformatics tools can be used in resequencing projects to effectively speed up the process of analyzing complex diseases. In this video examplified by a publication on X-Linked mental retardation from the Max-Planck Institute.